Seismic response of site conditions to Xigeda formation of Xichangthree-dimensional subgrade

In order to find out the effect of site structure and distribution of cut-fill area on the seismic responses rules of Xigeda formation three-dimensional subgrade in Xichang, finite element method software is used to simulate the acceleration distribution on the surface of three-dimensional calculation models under seismic load. This paper discusses differences of subgrade seismic response from three aspects, including platform structure of the site, elevation mutation, and excavation and filling area. And there are four conclusions can be drawn. Firstly, the higher the elevation sites platform is,the greater the acceleration amplification factors are,especially in the changes of vertical acceleration amplification factors. Secondly, a sudden increase of elevation causes a sudden increase of vertical acceleration magnification factors, and acceleration amplification factors is getting smaller while extending to the platform inside. Thirdly, the acceleration amplification factors of filled area are greater than those of the excavation area. Fourthly, because terrain amplification of the seismic response is directional, three-dimensional calculation models should be used to numerical analysis. The results provide an important basis for the Xigeda subgrade base plan selection in Xichang and seismic design.     

核酸标准物质研究现状

以核酸扩增为基础的分子诊断技术越来越广泛的应用于医学研究、出入境检验检疫、疫病诊断等领域,核酸标准物质是保证体外诊断检测数据和结果准确一致的重要材料。作者介绍了国内外核酸标准物质的发展历史、研究现状及面临的挑战,展望了核酸标准物质未来发展方向。     

First isolation of hirame rhabdovirus from freshwater fish in Europe

A rhabdovirus was isolated in cell culture inoculated with tissue material from diseased grayling, Thymallus thymallus (L.), originating from a fish farm affected by a mortality episode in Poland. Diagnostics tests showed that the virus was not related to novirhabdoviruses known in Europe, nor to vesiculovirus‐like species, except perch rhabdovirus (PRhV) with which it shared moderate serological relations. However, RT‐PCR with PRhV probes gave negative results. To identify the virus, a random‐priming sequence‐independent single primer amplification was adopted. Surprisingly, two of the obtained sequences exhibited a high identity (>99%) with hirame rhabdovirus (HIRRV), a novirhabdovirus usually found in fish in marine Asiatic countries, for instance Japan, China and Korea. The full‐length sequence of the phosphoprotein gene (P) demonstrated a higher identity of the present isolate with HIRRV from China compared with the Korean isolate. An identical viral sequence was also found in brown trout, Salmo trutta trutta L., affected by mortalities in a second farm in the same region, after a likely contamination from the grayling farm. To our knowledge, this is the first report of HIRRV in Europe, and in two hosts from fresh water that have not been described before as susceptible species.     

叶用莴苣荧光定量PCR体系的优化

为建立一套最适合叶用莴苣(Lactuca sativa L.)基因表达量研究的荧光定量PCR技术体系,以叶用莴苣S24为试材,采用SYBR GreenⅠ法,利用叶用莴苣内参基因的2对引物组合18SR1和18SR2,分别在10 μL和20 μL反应体系条件下进行扩增反应。结果表明,分别在10 μL和20 μL反应体系条件下内参基因引物组合18SR1的扩增曲线、标准曲线以及溶解曲线等指标都优于内参基因引物组合18SR2;2对内参基因引物组合18SR1和18SR2在10 μL反应体系中的扩增曲线、标准曲线以及溶解曲线等指标也均优于20 μL反应体系。因此叶用莴苣荧光定量PCR内参基因利用18SR1引物组合,反应体系采用10 μL比较合理。     

马疱疹病毒1型LAMP检测方法的建立

本试验旨在建立一种检测马疱疹病毒1型（EHV-1）的快速、灵敏、特异的环介导等温扩增技术（LAMP）,同时评价该方法的可靠性。根据马鼻肺炎糖蛋白B（gB）基因特异保守序列设计多对LAMP引物,利用LAMP Real Time Turbidimeter LA-320仪监测反应进程,进行引物筛选和反应条件的优化,建立能特异性扩增EHV-1 DNA的LAMP检测方法,并加入SYBR GreenⅠ通过肉眼判断结果。该方法在65 ℃恒温下作用50 min,使EHV-1 DNA获得了高效率的特异性扩增,与其他马易感病毒如马疱疹病毒4型（EHV-4）等无交叉反应;且具有极高的灵敏性,可检测到10^-4稀释的目标病毒,比普通PCR的灵敏度高10倍;反应结束后加入SYBR GreenⅠ肉眼观察的结果与LAMP Real Time Turbidimeter LA-320仪监测结果一致。通过将4份临床样品的LAMP检测结果与已得到验证的PCR结果进行比对,结果显示符合率为100%。本研究建立的LAMP检测方法具有快速、特异、灵敏、简单易操作且设备要求低等特点,具有实地检测EHV-1的前景。     

环介导等温扩增技术的改进及其在病原微生物检测中的应用研究进展

环介导等温扩增技术(loop-mediated isothermal amplification,LAMP)是近年来发展出来的一种新型核酸扩增技术。自建立以来,该技术不断改进和发展,并广泛应用于病原微生物的检测,文章将就此展开综述。     

环介导等温扩增技术及其在动物疫病检测中的应用

环介导等温扩增技术(LAMP)是一种新型的体外等温扩增特异核酸片段的技术,具有灵敏度高、特异性强及快速检测等优点,现已经广泛应用于动物疫病的快速检测。文章对LAMP的反应原理、技术特点及其近年来在动物疫病检测中的应用作一综述,旨在为该技术的深入研究和应用提供参考。     

产5-氨基乙酰丙酸的光合细菌的分离鉴定及hemA基因扩增

为了获得5-氨基乙酰丙酸(ALA)的高产菌株,从多种生境分离出光合细菌,通过分光光度计法检测ALA含量,通过形态学分析及16SrRNA分析进行菌种鉴定,PCR进行hemA基因的检测。获得1株产ALA的菌株RB,确定其为光合细菌的红假单胞菌属(Rhodopseudomonas)的沼泽红假单胞菌(Rhodopseudomonas palustris)。其ALA产量为4.34 mg/L,进一步对该菌株进行hemA基因扩增,成功获得扩增产物。本实验可以成功分离出产ALA的光合细菌,并成功获得hemA扩增产物,为构建基因工程菌打下基础。     

Multiply-primed rolling-circle amplification (MPRCA) of PCV2 genomes: Applications on detection, sequencing and virus isolation

Multiply-primed rolling-circle amplification (MPRCA) was used to amplify porcine circovirus type 2 (PCV2) genomes isolated from tissues of pigs with signs of post-weaning multisystemic wasting syndrome (PMWS). Two of the amplified PCV2 genomes were cloned in prokaryotic plasmids and sequenced. Both were nearly identical (1767 nt) except for one silent substitution in the region coding for the capsid protein (ORF2). In addition, they showed high nucleotide sequence similarity with PCV2 isolates from others countries (93–99%). To investigate whether the MPRCA amplified PCV2 genomes could be used to produce infectious virus, the cloned genomes were isolated from the plasmids, recircularized and used for transfection in PK-15 cells. This procedure led to the production of infectious virus to titres up to 10^5.55 TCID₅₀/mL. It was concluded that MPRCA is a useful tool to amplify PCV2 genomes aiming at sequencing and virus isolation strategies, where particularly useful is the fact that it allows straightforward construction of PCV2 infectious clones from amplified genomes. However, it was less sensitive than PCR for diagnostic purposes.     

RT-LAMP技术检测菜豆荚斑驳病毒的研究

菜豆荚斑驳病毒(Bean pod mottle virus,BPMV)是我国对外公布的检疫性有害生物,本研究采用环介导等温扩增技术(loop-mediated isothermal amplification,LAMP),建立了一种快速、灵敏和特异的BPMV检测方法。根据BPMV外壳蛋白编码基因上的8个位点,共设计了6条引物,通过RT-LAMP扩增得到特征性的瀑布状条带。特异性试验表明,引物对BPMV的检测具有良好的特异性;灵敏度试验显示RT-LAMP比RT-PCR灵敏度高1 000倍。该方法无需特殊的试剂和设备,只需在水浴锅中60℃等温扩增,整个检测周期约2~2.5 h,适合BPMV的快速、准确检测。